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Scrimer #
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Structured data


Scrimer #

Scrimer is an automated pipeline for designing primers for genotyping from the next-generation sequence raw transcriptome data. The designed primers can be used in conjunction with several widely used genotyping methods such as SNaPshot or MALDI-TOF genotyping.

Steps #

  • Adapter removal
  • Mapping reads
  • SNP's selection
  • Primer designing


Downlaod #

References #

  • Libor Mořkovský, Jan Pačes, Jakub Rídl and Radka Reifová (2015) Scrimer: designing primers from transcriptome data, Molecular Ecology Resources, 15(6): 1415-1420.

  • Scrimer