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Structured data

Category
Software

Repetitive motif detection by Assembly of Repetitive k-mers (RepARK) #

  1. Reference 유전체 정보가 없이 NGS WGS 리드의 k-mer 사용시 잠정적인 바이어스를 피하기 위한 목적의 프로그램
  2. De novo 유전체 분석시 De novo repeat library 구축을 위한 프로그램
  3. NGS sequencing reads를 활용한 repeat library 구축

Workflow #

  1. K-mer counting : Jellyfish
  2. abundant k-mers : velvet/ wgs-assembler/ CLCAssemblyCell/ etc.
  3. repeat consensus : cap3/ cd-hit-est/ length cutoff

MarkDown

Result #

MarkDown

Reference #

(http://nar.oxfordjournals.org/content/early/2014/03/14/nar.gku210.full)

Incoming Links #

Related Bioinformaticses #

0.0.1_20140628_0