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Cuffmerge
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- (rev. 3)
- Hana Song
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개요 #
Cuffmerge는 Cufflinks의 package 중 하나의 프로그램이다.
Cufflinks의 Workflow는 아래와 같다.
[출처 : http://m.blog.daum.net/kimuks/7538177]
Data #
- Input data : reference *fa
- Output data : gtf_list.txt
Usage #
cuffmerge [Options] <assembly_GTF_list.txt>
Options #
| -o | Directory where merged assembly will be written [ default: ./merged_asm ] | |
| -g/--ref-gtf | An optional "reference" annotation GTF. | |
| -s/--ref-sequence | / | Genomic DNA sequences for the reference |
| --min-isoform-fraction | <0-1.0> | Discard isoforms with abundance below this [ default: 0.05 ] |
| -p/--num-threads | Use this many threads to merge assemblies. [ default: 1 ] | |
| --keep-tmp | Keep all intermediate files during merge |
