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Cuffmerge #
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Structured data

Category
Software

개요 #

CuffmergeCufflinks의 package 중 하나의 프로그램이다.

Cufflinks의 Workflow는 아래와 같다.

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[출처 : http://m.blog.daum.net/kimuks/7538177]

Data #

  • Input data : reference *fa
  • Output data : gtf_list.txt

Usage #

cuffmerge [Options] <assembly_GTF_list.txt>

Options #

-o Directory where merged assembly will be written [ default: ./merged_asm ]
-g/--ref-gtf An optional "reference" annotation GTF.
-s/--ref-sequence / Genomic DNA sequences for the reference
--min-isoform-fraction <0-1.0> Discard isoforms with abundance below this [ default: 0.05 ]
-p/--num-threads Use this many threads to merge assemblies. [ default: 1 ]
--keep-tmp Keep all intermediate files during merge
0.0.1_20140628_0