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생물정보 솔루션 리스트 #

Software Description Platform License Developer
NET Bio A language-neutral bioinformatics toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists. .NET Framework Apache License Collaborative project
AMPHORA Metagenomics analysis software Linux GNU General Public License Developer
Anduril Component-based workflow framework for data analysis Linux, Mac OS X, Windows GPL University of Helsinki
Armadillo workflow platform Tool for designing and executing phylogenetic workflows Mac OS X, Windows General Public Licence (GPL) Armadillo
AutoDock suite of automated docking tools Platform GNU GPL Developer
Biochemical Algorithms Library (BALL) C++ library and framework for molecular modeling and visualization designed for rapid prototyping Linux, Mac OS X, Windows LGPL BALL project team
Bio4j Bio4j is a bioinformatics platform and graph based database built around most data available in UniProt KB(Swiss-Prot + TrEMBL), Gene Ontology (GO), UniRef (50,90,100), RefSeq, NCBI taxonomy, and Expasy Enzyme DB Cross-platform AGPL v3 Oh no sequences!
Bioclipse Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP). Platform Eclipse Public License The Bioclipse Project
Bioconductor R (programming language) language toolkit Linux, Mac OS X, Windows Artistic License 2.0 Fred Hutchinson Cancer Research Center
Bioinformatics Learning Tutorial (BLT) Educational interactive tutorials and 3D animations for Replication, Transcription, and Translation Windows (stand-alone), Linux & Mac OS X (source code only with Qt libraries) Academic Free License Collaborative project
BioHaskell Haskell (programming language) Linux, Mac OS X, Windows GPL, LGPL, and BSD Collaborative project
BioJava Java (programming language) Linux, Mac OS X, Windows LGPL v2.1 Open Bioinformatics Foundation
BioMOBY registry of web services Web Artistic License Open Bioinformatics Foundation
BioPerl Perl language toolkit Cross-platform Artistic License & GPL Open Bioinformatics Foundation
BioPHP PHP language toolkit Platform GPL v2 Open Bioinformatics Foundation
Biopython Python language toolkit Cross-platform Biopython License Open Bioinformatics Foundation
BioRuby Ruby language toolkit Platform GNU GPL v2 or Ruby license Open Bioinformatics Foundation
BioSmalltalk Smalltalk language toolkit Cross-platform MIT license Developer
BioUno BioUno is a project that applies Continuous Integration tools and techniques in Bioinformatics. It uses Jenkins and its plug-in API to create biology workflows and manage computer clusters. Cross-platform MIT license TupiLabs
dnet An open-source R package for analysing biological networks and high-throughput biological data in an integrative manner Linux, Mac OS X, Windows GPL University of Bristol
EMBOSS Suite of packages for sequencing, searching, etc. Platform General Public Licence (GPL) and Library GPL Collaborative project
Gaggle A framework for interoperability between systems biology software Linux, Mac OS X, Windows LGPL Institute for Systems Biology
Galaxy Scientific workflow and data integration system Unix-like Academic Free License Penn State and Emory University
GenePattern Scientific workflow system that provides access to more than 150 genomic analysis tools Unix-like (public server); Linux, Mac OS X, Windows MIT license Broad Institute
GeWorkbench Genomic data integration platform Linux, Mac OS X, Windows License Columbia University
GMOD Toolkit for addressing many common challenges at biological databases. Unix-like (server), Web browser (client) Varies depending on tool Collaborative project
GeneProf A web-based, bioinformatics software suite for the analysis of functional genomics experiments, e.g. RNA-seq or ChIP-seq. Web browser Varies depending on tool Scottish Centre for Regenerative Medicine bioinformatics group
GenGIS Application that allows users to combine digital map data with information about biological sequences collected from the environment. Windows, Mac OS X GPL Collaborative project
GenomeSpace Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools Web browser LGPL Broad Institute, Collaborative project
GENtle An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files Platform GPL Magnus Manske
Integrated Genome Browser Java-based desktop genome browser Linux, Mac OS X, Windows CPL 1.0 GenoViz
Integrative Genomics Viewer (IGV) High-performance desktop tool for interactive visual exploration of diverse genomic data Linux, Mac OS X, Windows LGPL Broad Institute
IntAct molecular interaction database Platform Apache License v2 European Bioinformatics Institute
InterMine Extensive data warehouse system for the analysis and integration of biological datasets Cross-platform LGPL University of Cambridge
Java Treeview microarray data viewer Cross-platform License Developer
LabKey Server platform for integrating, analyzing and sharing data Linux, Mac OS X, Windows Apache License LabKey Software Foundation
OpenClinica software for capturing and managing data in clinical trials Linux, Windows LGPL OpenClinica
PromKappa] PromKappa (Promoter analysis by Kappa) software program used for promoter pattern generation and promoter analysis. Windows Open access University of Bucharest
Multi-Experiment Viewer (MeV) a desktop application for the analysis, visualization and data-mining of large-scale genomic data Linux, Mac OS X, Windows Artistic License Dana-Farber Cancer Institute
PathVisio a desktop software for drawing, analysis and visualization of biological pathways Linux, Mac OS X, Windows Apache 2.0 License Maastricht University
REDCRAFT software for determining tertiary protein structure given assigned Residual Dipolar Coupling data Linux, Mac OS X, Windows GPL v3 REDCRAFT
SAM Tools Data format (SAM) and accompanying tool suite, for storing large nucleotide sequence alignments Linux BSD, MIT License 1000 Genomes Project
Staden Package Sequence assembly, editing and analysis, primarily consisting of gap4, gap5 and spin. Linux, Mac OS X, Windows BSD Wellcome Trust Sanger Institute / Medical Research Council
STAMP Software package for analyzing metagenomic profiles that promotes ‘best practices’ in choosing appropriate statistical techniques and reporting results. Windows, Mac OS X GPL Collaborative project
supraHex An open-source R/Bioconductor package for omics data analysis using a supra-hexagonal map Linux, Mac OS X, Windows GPL University of Bristol
Taverna workbench Tool for designing and executing workflows Linux, Mac OS X, Windows LGPL myGrid
TGAC Browser Genome Browser, visualisation solutions for big data in the genomic era Unix-like (server), Web browser (client) GPL V3 The Genome Analysis Centre (TGAC), UK
T-REX WebServer Bioinformatics and phylogenetics webserver (NJ, PhyML, RAxML, MAFFT, MUSCLE, Newick viewer, Horizontal gene transfer detection, Reticulograms, Substitution models) Web platform Academic Free License T-REX
UGENE integrated bioinformatics tools Linux, Mac OS X, Windows GPL2 Unipro
Visomics bioinformatics tools for omics data Windows Apache 2.0 License Collaborative Project
Genome Analysis Toolkit 1.0 (GATK 1.0) a software package to analyse next-generation resequencing data Linux MIT license Broad Institute

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